BioSystems Reading Group: Bibtex Bibliography

Algorithms for Self-Organization and Adaptive Service Placement in Dynamic Distributed Systems

@techReport{andrzejak,
author = {A. Andrzejak and S. Graupner and V. Kotov and H. Trinks},
title = {Algorithms for Self-Organization and Adaptive Service Placement in Dynamic Distributed Systems},
institution = {HP Laboratories Palo Alto},
year = {2002}
}

The Building Behavior of Lattice Swarms

@InProceedings{bonabeauetal94,
author = {Eric W. Bonabeau and Guy Theraulaz and Eric Arpin and Emmanuel Sardet},
title = {The Building Behavior of Lattice Swarms},
booktitle = {Artificial Life IV},
crossref = {alife4},
pages = {307-312},
year = 1994,
editor = {Rodney A. Brooks and Pattie Maes},
publisher = {MIT Press, Cambridge, MA}
}

Three-dimensional architectures grown by simple 'stigmergic' agents

@article{bonab2000,
author = {Bonabeau, E., Guerin, S., Snyers, D., Kuntz, P., Theraulaz, G.},
title = {Three-dimensional architectures grown by simple 'stigmergic' agents},
year = 2000,
journal = {biosystems},
volume = {56},
pages = {13-32},
}

Form and Order in Evolutionary Biology

@inbook{burian_richardson96,
author = {R. M. Burian and R. C. Richardson},
title = {Form and Order in Evolutionary Biology},
editor = {M. A. Boden},
booktitle = {The Philosphy of Artificial Life},
pages = {146-172},
publisher = {Oxford University Press, Oxford},
year = {1996}
}

Economic Models of Animal Communication

@Article{bradbury_verencamp2000,
author = {J. W. Bradbury and Sandra L. Vehrencamp},
title = {Economic Models of Animal Communication},
journal = {Animal Behaviour},
year = 2000,
volume = 59,
pages = {259-268}
}

Intelligence without Reason

@INPROCEEDINGS{brooks91b,
AUTHOR = {Rodney A. Brooks},
BOOKTITLE = {Proceedings of the Twelfth International Joint Conference on Artificial Intelligence},
PAGES = {139-159},
TITLE = {Intelligence without Reason},
YEAR = {1991}
}

Introduction to general discussion

@ARTICLE{cain79,
AUTHOR = {A. J. Cain},
JOURNAL = {Proc. R. Soc. London. B},
PAGES = {599-604},
TITLE = {Introduction to general discussion},
VOLUME = {205},
YEAR = {1979}
}

Learning lessons from the common cold: How reducing parasite virulence improves coevolutionary optimization

@INPROCEEDINGS{cartlidge_bullock2002,
author = {John Cartlidge and Seth Bullock},
title = {Learning lessons from the common cold: How reducing parasite virulence improves coevolutionary optimization},
booktitle = {Congress on Evolutionary Computation},
year = {2002},
pages = {1420-1425},
publisher = {IEEE Press}
}

The Extended Mind

@ARTICLE{clark_chalmers98,
author = {Andy Clark and David J. Chalmers},
title = {The Extended Mind},
journal = {Analysis},
pages = {10-23},
volume = {58},
year = {1998}
}

Animat Market - Trading Interactions as Collective Social Adaptive Behaviour

@ARTICLE{cliff_bruten99,
author = {Dave Cliff and Janet Bruten},
title = {Animat Market - Trading Interactions as Collective Social Adaptive Behaviour},
journal = {Adaptive Behaviour},
pages = {385-414},
volume = {7},
number = {3},
year = {1999}
}

Long Term Behavior of Lithographically Prepared In Vitro Neuronal Network

@ARTICLE{cohen2002,
AUTHOR = {R. Segev and M. Benveniste and E. Hulata and N. Cohen and A Palevski and E. Kapon and Y. Shapira and E. Ben-Jacob},
JOURNAL = {Physical Review Letters},
PAGES = {3556-3559},
TITLE = {Long Term Behavior of Lithographically Prepared In Vitro Neuronal Network},
VOLUME = {88},
ISSUE = {118102},
YEAR = {2002}
}

Emergence of Spontaneous Rhythm Disorders in Self-Assembled Networks of Heart Cells

@ARTICLE{cohen99,
AUTHOR = {Soen Y. and Cohen N. and Lipson D. and Braun E.},
JOURNAL = {Physical Review Letters},
PAGES = {3556-3559},
TITLE = {Emergence of Spontaneous Rhythm Disorders in Self-Assembled Networks of Heart Cells},
VOLUME = {82},
ISSUE = {17},
YEAR = {1999}
}

Darwinism old and new

@inbook{cronin92a.htm,
author = {Helena Cronin},
booktitle = {The Ant and the Peacock},
publisher = {Cambridge University Press},
title= {Darwinism old and new},
pages = {53-80},
year = {1992}
}

Demarcations of design

@inbook{cronin92b.htm,
author = {Helena Cronin},
booktitle = {The Ant and the Peacock},
publisher = {Cambridge University Press},
title= {Demarcations of design},
pages = {80-110},
year = {1992}
}

Arms Races between and within Species

@Article{dawkins_krebs79,
author = {Richard Dawkins and J. R. Krebs},
title = {Arms Races between and within Species},
journal = {Proceedings of the Royal Society of London, Series \emph{B}},
year = 1979,
volume = 205,
pages = {489-511}
}

Adaptation of Evolutionary Agents in Computational Ecologies

@inproceedings{devineetal97,
author = "Paul Devine and Ray Paton and Martyn Amos",
title = "Adaptation of Evolutionary Agents in Computational Ecologies",
booktitle = "{BCEC}",
pages = "66-75",
year = "1997"
}

Autonomous Concept Formation

@inproceedings{dejong99,
author = "Edwin D. de Jong",
title = "Autonomous Concept Formation",
booktitle = "{IJCAI}",
pages = "344-349",
year = "1999"
}

Homeostatic adaptation to inversion of the visual field and other sensorimotor disruptions

@inproceedings{dipaolo2000,
author = "E. A. Di Paolo",
title = "Homeostatic adaptation to inversion of the visual field and other sensorimotor disruptions",
booktitle = "{SAB}",
publisher = "MIT Press",
pages = "",
year = "2000"
}

History of Interaction

@INbook{dourish2001,
author = {Paul Dourish},
booktitle = {Where the Action Is: The Foundations of Embodied Interaction},
pages = {1-27},
publisher = {Bradford Books, MIT Press},
title = {History of Interaction},
year = {2001}
}

Challenges in Coevolutionary Learning: Arms-Race Dynamics, Open-Endedness, and Mediocre Stable States

@inproceedings{ficici_pollack98b,
author = {Sevan G. Ficici and Jordan B. Pollack},
title = {Challenges in Coevolutionary Learning: Arms-Race Dynamics, Open-Endedness, and Mediocre Stable States},
booktitle = {Artificial {L}ife {VI}: {P}roc.\ of the {S}ixth {I}nt.\ {C}onf.\ on {A}rtificial {L}ife},
crossref = {alife6},
publisher = {The MIT Press},
address = {Cambridge, MA},
editor = {Christoph Adami and Richard K. Belew and Hiroaki Kitano and Charles Taylor},
pages = {238--247},
year = {1998} }

Is it an Agent, or just a Program?: A Taxonomy for Autonomous Agents

@InProceedings{franklin_graesser96,
author = {S. Franklin and A. Graesser},
title = {Is it an Agent, or just a Program?: A Taxonomy for Autonomous Agents},
booktitle = {Proceedings of the Third International Workshop on Agent Theories, Architectures, and Languages, published as Intelligent Agents III},
pages = {21-35},
year = 1996,
editor = {},
publisher = {Springer-Verlag}
}

Conditions for the evolution of mimicry

Conditions for the evolution of mimicry.
Poster submitted sab2002.

How...will things that think be developed?

@inbook{gershenfeld99.htm,
author = {Neil Gershenfeld},
booktitle = {When Things Start To Think},
publisher = {Hodder _ Stoughton, London},
title= {How...will things that think be developed?},
pages = {174-247},
year = {1999}
}

Collaborative Control of Robot Motion: Robustness to Error

@InProceedings{goldberg_chen2001,
author = {K. Goldberg and B. Chen},
year = 2001,
title = {Collaborative Control of Robot Motion: Robustness to Error},
editor = {},
booktitle = {IEEE/RSJ International Conference on Robots and Systems},
pages = {}
}

Geometry for the Selfish Herd

@ARTICLE{hamilton71,
AUTHOR = {W. D. Hamilton},
JOURNAL = {Journal of Theoretical Biology},
PAGES = {295-311},
TITLE = {Geometry for the Selfish Herd},
VOLUME = {31},
YEAR = {1971}
}

Darwinian adaptation, population genetics and the streetcar theory of evolution

@ARTICLE{hammerstein96,
AUTHOR = {P. Hammerstein},
JOURNAL = {Journal of Mathematical Biology},
PAGES = {533-555},
TITLE = {Darwinian adaptation, population genetics and the streetcar theory of evolution},
VOLUME = {34},
ISSUE = {5/6},
YEAR = {1996}
}

Enhancing game theory with coevolutionary simulation models of honest signalling

@INPROCEEDINGS{harris_bullock2002,
author = {Dave Harris and Seth Bullock},
title = {Enhancing game theory with coevolutionary simulation models of honest signalling},
year = {2002},
pages = {1594-1599},
publisher = {IEEE Press}
}

How learning can guide evolution

@ARTICLE{hinton_nowlan87,
author = {G. E. Hinton and S. J. Nowlan},
journal = {Complex Systems},
pages = {495-502},
title = {How learning can guide evolution},
volume = 1,
year = 1987
}

Dynamics of mimicry evolution

@ARTICLE{holmgren_enquist,
AUTHOR = {Holmgren, N. and Enquist, M},
JOURNAL = {Biological Journal of the Linnean Society},
PAGES = {145-158},
TITLE = {Dynamics of mimicry evolution},
VOLUME = {66},
YEAR = {1999}
}

Comparing True and Diffuse Coevolution in a Physics-Based World

@InProceedings{hornby_mirtich99,
author = {Gregory S. Hornby and Brian Mirtich},
title = {Comparing True and Diffuse Coevolution in a Physics-Based World},
crossref = {gecco99},
booktitle = {Genetic and Evolutionary Computation Conference GECCO},
year = 1999
}

The Advantages of Generative Grammatical Encodings for Physical Design

@Miscellaneous{hornby_pollack2001,
author = {G. Hornby and J. Pollack},
title = {The Advantages of Generative Grammatical Encodings for Physical Design},
booktitle = {Congress on Evolutionary Computation},
year = {2001}
}

Communication in Discrete Action-Response Games

@ARTICLE{hurd95, author = {Peter L. Hurd},
journal = {Journal of Theoretical Biology},
pages = {217-222},
title = {Communication in Discrete Action-Response Games},
volume = {174},
year = {1995}
}

When is it co-evolution?

@Article{janzen80,
author = {D. H. Janzen},
title = {When is it co-evolution?},
journal = {Evolution},
year = 1980,
volume = 34,
number = 3,
pages = {611-612}
}

Today the earwig, tomorrow man

@ARTICLE{kirsh91,
AUTHOR = {David Kirsh},
TITLE = {Today the earwig, tomorrow man},
JOURNAL = {Artificial Intelligence},
PAGES = {161-184}
VOLUME = {47},
YEAR = {1991}
}

Collective robotics: From social insects to robots

@Article{kube_zhang93,
author = {C. Ronald Kube and Hong Zhang},
title = {Collective robotics: From social insects to robots},
journal = {Adaptive Behavior},
year = 1993,
volume = 2,
number = 2,
pages = {189-218},
annote = {Lifted}
}

Evolutionary consequences of niche construction and their implications for ecology

@Article{lalandetal99,
author = {K.N. Laland and J. Olding-Smee and M.W. Feldman},
title = {Evolutionary consequences of niche construction and their implications for ecology},
journal = {Proceedings of the National Academy of Sciences, U.S.A},
year = 1999,
volume = 96,
number = 18,
pages = {10242-10247},
month = {August}
}

It Aint Necessarily So: The Dream of the Human Genome and Other Confusions

@INBOOK{lewontin2000,
AUTHOR = {R. Lewontin},
BOOK = {It Aint Necessarily So: The Dream of the Human Genome and Other Confusions},
PAGES = {303-330},
TITLE = {Survival of the nicest},
YEAR = {2000},
EDITORS = {R. Lewontin},
PUBLISHER = {Granta, London}
}

The Spandrels of San Marcos and the Panglossian Paradigm: a critique of the adaptationist program

@ARTICLE{lewontin_gould79,
AUTHOR = {R. C. Lewontin and S. J. Gould},
JOURNAL = {Proc. R. Soc. Lond.},
PAGES = {581-598},
TITLE = {The Spandrels of San Marcos and the Panglossian Paradigm: a critique of the adaptationist program},
VOLUME = {205},
YEAR = {1979}
}

Modeling the Process of Rate Selection in Neuronal Activity

@Article{manevitz_marom02,
author = {L. M. Manevitz and S. Marom},
title = {Modeling the Process of Rate Selection in Neuronal Activity},
journal = {Journal of Theoretical Biology},
year = 2002,
volume = 216,
pages = {337-343}
}

How amoeboids self-organize into a fruiting body: Multicellular coordination in Dictyostelium discoideum

@article{maree_hogeweg2001,
author = {Athanasius F. M. Mar\'{e}e and Paulien Hogeweg},
title = {How amoeboids self-organize into a fruiting body: Multicellular coordination in Dictyostelium discoideum},
journal = {Proc. Natl. Acad. Sci. USA},
volume = 98,
number = 7,
pages = {3879-3883},
year = 2001
}

Designing and Understanding Adaptive Group Behavior

@ARTICLE{mataric95,
AUTHOR = {M. J. Mataric},
JOURNAL = {Adaptive Behaviour},
PAGES = {51-80},
TITLE = {Designing and Understanding Adaptive Group Behavior},
VOLUME = {4},
NUMBER = {1},
YEAR = {1995}
}

The Content of Perceptual Experience

@INBOOK{mcdowell98,
AUTHOR = {John McDowell},
BOOK = {Mind, Value and Reality},
PAGES = {341-358},
TITLE = {The Content of Perceptual Experience},
YEAR = {1998},
EDITORS = {John McDowell},
PUBLISHER = {Harvard University Press}
}

Truth Rules, Hoverflies, and the Kripke-Wittgenstein Paradox

@INbook{millikan93e,
author = {Ruth Garrette Millikan},
booktitle = {White Queen Psychology and Other Essays for Alice},
pages = {211-238},
publisher = {MIT Press},
title = {Truth Rules, Hoverflies, and the Kripke-Wittgenstein Paradox},
crossref = {millikan93},
year = {1993}
}

Propensities, Exaptions, and the Brain

@INbook{millikan93c,
author = {Ruth Garrette Millikan},
booktitle = {White Queen Psychology and Other Essays for Alice},
pages = {31-50},
publisher = {MIT Press},
title = {Propensities, Exaptions, and the Brain},
crossref = {millikan93},
year = {1993}
}

Biosemantics

@INbook{millikan93d,
author = {Ruth Garrette Millikan},
booktitle = {White Queen Psychology and Other Essays for Alice},
pages = {83-102},
publisher = {MIT Press},
title = {Biosemantics},
crossref = {millikan93},
year = {1993}
}

What Is It Like to Be a Bat?

@InCollection{nagel81,
author = {Thomas Nagel},
booktitle = {The Mind's I: Fantasies and Reflections on Self and Soul},
pages = {-},
publisher = {Basic Books},
title = {What Is It Like to Be a Bat?},
editor = {D. C. Dennett and D. R. Hofstadter},
year = {1981}
}

Learning policies with external memory

@inproceedings{peshkinetal99,
author = "Leonid Peshkin and Nicolas Meuleau and Leslie Pack Kaelbling",
title = "Learning policies with external memory",
booktitle = "Proc. 16th International Conf. on Machine Learning",
publisher = "Morgan Kaufmann, San Francisco, CA",
pages = "307--314",
year = "1999"
}

Modelling animal behaviour in contests: Conventions for resource allocation

@INPROCEEDINGS{quinn_noble2001,
author = {Quinn, M. and Noble, J.},
booktitle = {Advances in Artificial Life: Sixth European Conference on Artificial Life (ECAL01)},
editor = {J. Kelemen and P. Sosí,
address = {Berlin Heidelberg},
publisher = {Springer-Verlag},
title = {Modelling animal behaviour in contests: Conventions for resource allocation.},
year = {2001},
crossref = {ecal01}
}

Simulation of Biological Evolution and Machine Learning: I. Selection of Self-reproducing Numeric Patterns by Data Processing Machines, Effects of Hereditary Control, Mutation Type and Crossing

@ARTICLE{reedetal67,
author = {Reed, J. and Toombs, R. and Barricelli, N. A.},
title = {Simulation of Biological Evolution and Machine Learning: I. Selection of Self-reproducing Numeric Patterns by Data Processing Machines, Effects of Hereditary Control, Mutation Type and Crossing},
journal = {Journal of Theoretical Biology},
year = {1967},
volume = {17},
pages = {319-342}
}

Competition, Coevolution and the Game of Tag

@InProceedings{reynolds94,
author = {Craig W. Reynolds},
title = {Competition, Coevolution and the Game of Tag},
booktitle = {Artificial Life IV},
pages = {59-69},
year = 1994,
editor = {R. A. Brooks and P. Maes},
crossref = {alife4},
publisher = {MIT Press, Cambridge, MA}
}

Life, mind and robots: the ins and outs of embodiment

@INBOOK{sharkey_ziemke2000,
AUTHOR = {N. Sharkey and T. Ziemke},
BOOK = {Hybrid Neural Systems},
PAGES = {313-332},
TITLE = {Life, mind and robots: the ins and outs of embodiment},
YEAR = {2000},
EDITORS = {S. Wermter and R. Sun},
PUBLISHER = {Springer Verlag, Heidelberg}
}

Artificial Evolution for Computer Graphics

@Article{sims91,
author = {K. Sims},
title = {Artificial Evolution for Computer Graphics},
journal = {Computer Graphics},
year = 1991,
volume = 25,
number = 4,
pages = {319-328}
}

The Artificial Life Roots of Artificial Intelligence

@Article{steels94,
author = {L. Steels},
title = {The Artificial Life Roots of Artificial Intelligence},
journal = {Artificial Life},
year = 1994,
volume = 1,
number = {1/2},
pages = {75-110}
}

A Mechanism for Passive Range Exclusion: Evidence from the European Badger (Meles meles)

@ARTICLE{stewartetal97,
AUTHOR = {P.D. Stewart and C. Anderson and D.W. Macdonald},
JOURNAL = {Journal of Theoretical Biology},
PAGES = {279-289},
TITLE = {A Mechanism for Passive Range Exclusion: Evidence from the European Badger (Meles meles)},
VOLUME = {184},
YEAR = {1997}
}

What might cognition be, if not computation?

@Article{vanGelder95,
author = "T. van Gelder",
title = "What might cognition be, if not computation?",
journal = {Journal of Philosophy},
year = 1995,
volume = 91,
pages = {345-381}
}

Coevolutionary Dynamics in a Minimal Substrate

@InProceedings{watson_pollack2001,
author = {Richard. A. Watson and Jordan B. Pollack},
title = {Coevolutionary Dynamics in a Minimal Substrate},
booktitle = {Proceedings of the Genetic and Evolutionary Computation Conference},
crossref = {gecco2001},
pages = {702-709},
year = {2001}
}

Networks, dynamics and the small-world phenomenon

@ARTICLE{watts99,
AUTHOR = {D. J. Watts},
JOURNAL = {American Journal of Sociology},
PAGES = {493-527},
TITLE = {Networks, dynamics and the small-world phenomenon},
VOLUME = {105},
NUMBER = {2},
YEAR = {1999}
}

Integrating Reactive Behavior, Sequential Behavior, and Learning Using Dynamical Neural Networks

@InProceedings{yamauchi_beer94b,
author = {Brain M. Yamauchi and Randall D. Beer},
title = {Integrating Reactive Behavior, Sequential Behavior, and Learning Using Dynamical Neural Networks},
booktitle = {From Animals to Animats 3: Proceedings of the Third International Conference on Simulation of Adaptive Behavior},
year = 1994,
pages = {382-391},
editor = {Dave Cliff and Philip Husbands and J.-A. Meyer and S. W. Wilson},
publisher = {MIT Press, Cambridge, MA},
crossref = {sab94}
}

Sequential Behavior and Learning in Evolved Dynamical Neural Networks

@Article{yamauchi_beer94,
author = {Brian M. Yamauchi and Randall D. Beer},
title = {Sequential Behavior and Learning in Evolved Dynamical Neural Networks},
journal = {Adaptive Behavior},
year = 1994,
volume = 2,
number = 3,
pages = {219-246}
}







































BioSystems Reading Group: Bibtex Bibliography.
John Cartlidge.